PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G41660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 846aa    MW: 93864.1 Da    PI: 9.1345
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G41660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.81.2e-1161453128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgy.. 82 
                      +G+ F+P+d++l + yL+  + +++       +++ ++ +d+y++ P +L +       + +++ + wy F++ +   ++g rk r++  g   
  ONIVA03G41660.1   6 KGLVFSPSDDQLTDGYLRSYLVRTSlddlpSAATSYFHVADVYSAPPDQLVAglapapgTGDGDGRVWYVFTPVRVLGSRGARKARTVGGGGge 99 
                      6999***************998888667643333459999**********7456776654455778********************87755334 PP

              NAM  83 .WkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                       W+a g  k+v+   +++ g  + + +  k      +k  W+m e++l
  ONIVA03G41660.1 100 cWHAEGGPKDVKG--SAAGGKLQKFSYKiKTALGAVVKPGWLMVEFSL 145
                      5**********87..666677777888733344556799*******87 PP

2B361.41.5e-19400487197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+kv+     +k+g +++p kfa+++gg+   s t++le+++g+++ev++   k  +  vl++GW++F++a +L+ gD++vF ++g+s f  +v
  ONIVA03G41660.1 400 FIKVM--ITDFKNG-VTIPAKFARNFGGQM--SGTVKLETRNGKTYEVQV--AKELNNLVLRSGWERFASAYELEKGDILVFIYSGNSHF--KV 484
                      67777..6678887.********9999994..559***************..**********************************9999..66 PP

                      EEE CS
               B3  95 kvf 97 
                       ++
  ONIVA03G41660.1 485 WIY 487
                      655 PP

3B341.91.8e-13597680693
                      ..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      + + + + g+l ++k++a ++ ++k+e  t++l +  ++ +W++ l  +   +  y l++GW +F + n+L+egD++vF+ ++++++  v
  ONIVA03G41660.1 597 MDKASATDGLLAISKDYAVSYLLDKNE--TIKLCHsGRSMTWDISL--DIDTDDqYALSTGWLDFIRNNHLQEGDICVFEASKNKRG--V 680
                      5566778899***********888767..56665536678899999..4444434*************************8887666..3 PP

4B341.13.2e-1375784313100
                      TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-SS CS
               B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrks 100
                      s+ ++++ k+a+++      e+ +++   + ++s++ k  ++ + + + l++GW +Fv++n++k gD+++F+l+++ ++  ++v+++rks
  ONIVA03G41660.1 757 SRYMCFSAKYAAKYlP--R-EKNKIMSLRLPNKSYKYKAVFKINNKVHKLGGGWGKFVDDNKIKLGDICLFQLMKNkKKLMMMVHIIRKS 843
                      5667888899999942..2.333566666677888888888999999***************************999*********9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-224159IPR003441NAC domain
PROSITE profilePS5100519.9214159IPR003441NAC domain
PfamPF023651.6E-77145IPR003441NAC domain
SuperFamilySSF1019361.67E-22394492IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-22396492IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.465397490IPR003340B3 DNA binding domain
CDDcd100171.58E-21398488No hitNo description
SMARTSM010192.6E-16400490IPR003340B3 DNA binding domain
PfamPF023621.5E-17400486IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-17586684IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-18586685IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-11591672No hitNo description
PROSITE profilePS5086312.379592687IPR003340B3 DNA binding domain
SMARTSM010195.5E-6593690IPR003340B3 DNA binding domain
PfamPF023621.7E-10598679IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-16736843IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-19737843IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-14742824No hitNo description
SMARTSM010194.2E-6744843IPR003340B3 DNA binding domain
PROSITE profilePS508639.841745843IPR003340B3 DNA binding domain
PfamPF023621.0E-11756842IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MAEIGKGLVF SPSDDQLTDG YLRSYLVRTS LDDLPSAATS YFHVADVYSA PPDQLVAGLA  60
PAPGTGDGDG RVWYVFTPVR VLGSRGARKA RTVGGGGGEC WHAEGGPKDV KGSAAGGKLQ  120
KFSYKIKTAL GAVVKPGWLM VEFSLPGSDH LALCKVYRSP RTSRYGAPSP PSSAASSPSR  180
AAPPPVSSTS GRKRKAEEES DHPEAPASSA PRRTLPASEQ HVDVDAAAAS EPDQGGYLNT  240
DQLDSVAAFV QEHEAFVQEH EGDEEFYKNL GFDERSDPQC WTNFFLSALE EFGPAPETDA  300
AAVAVAAVEP GPCPDPTPSF TMGYNAPKDI FSFKFYVYIY CRCLDMVALW LASSALLKHG  360
KLALRADRQS GHRMEKSHRV CKNCVANHYW LHMDNHGKSF IKVMITDFKN GVTIPAKFAR  420
NFGGQMSGTV KLETRNGKTY EVQVAKELNN LVLRSGWERF ASAYELEKGD ILVFIYSGNS  480
HFKVWIYDPS ACEKELPCII TEQLPRVQQR SISHNNHTQL KRNAKSAKLY VDSSGHTERV  540
PSSEELDEPV DLANVQKATK SFYSLPRMCN MTSAQKAEVD ALEKRIKPQI PFYITVMDKA  600
SATDGLLAIS KDYAVSYLLD KNETIKLCHS GRSMTWDISL DIDTDDQYAL STGWLDFIRN  660
NHLQEGDICV FEASKNKRGV ALIFHPLKQS HHPKPPGCVP STKFPRHGVS KPNYIVSRFT  720
TLSGQLKIKV EAKVQAIQSE IPIFVAVMRE SFIRGRSRYM CFSAKYAAKY LPREKNKIMS  780
LRLPNKSYKY KAVFKINNKV HKLGGGWGKF VDDNKIKLGD ICLFQLMKNK KKLMMMVHII  840
RKSEFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1333390.0AC133339.3 Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence.
GenBankAC1337780.0AC133778.4 Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664156.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
SwissprotQ2QMT60.0Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A0E0GVZ70.0A0A0E0GVZ7_ORYNI; Uncharacterized protein
STRINGORGLA12G0150200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-21B3 family protein